Proposal

Name:

Data Analysis Tools for Researchers and Students

FiscalYear:

2015

Audience:

Science, College of

Submitter:

Lasala, Jacob

Budget Manager:

Blanchard, Dominique

Project Manager:

Lasala, Jacob Andrew

Proposal Approvers

Dept. Chair:

Murphey, Rodney K.

Local IT:

N/A

Dean:

Blanks, Janet

Facilities:

N/A

OIT:

Bagdonas, Joseph A.

Proposal Funding

Year 1:

$ 8,400.00

Year 2:

$ 750.00

Year 3:

$ 750.00

Total:

$ 9,900.00

Proposal Funding versus Average

Questionnaire

Narrative

Research and scholarship are central to the mission of the Charles E. Schmidt College of Science (CESCOS). Beyond textbooks and lectures, FAU students increasingly are becoming researchers in the classroom and, in the process, becoming scholars.  In this way the missions of students, their teachers, and CESCOS support the mission of the University. FAU already houses many unique and active research programs, but opportunities to broadly integrate research into the classroom are often technologically limited.  This proposal seeks to eliminate a set of technological limits and to enhance FAU students’ scholarship by assisting multiple courses at several campuses.  It will provide state-of-the-field tools to equip biologists including environmental scientists and some neuroscientists to bring novel and innovative projects to FAU students.

To that end, I propose the purchase of a two computers (one to be positioned at Boca Raton and the other at the Davie campus in the Department of Biological Sciences) and GeneMarker software for genetic analyses.  Professors, teaching assistants, Principle Investigators and students of several research labs and teaching laboratories would use the software for their graduate and undergraduate research. Through an “Instructor’s License,” professors could offer an unlimited number of student licenses to use in training students in genetic data analyses.

In support of this request, I have discussed the value of replacing our long-out-dated genetics programs with the standard in the field, GeneMarker.  Drs. Murphey, Binninger, Detweiler, Baldwin, Hughes and Wyneken as well as multiple graduate and undergraduate students see tremendous research and teaching value in purchasing the software and two computers to serve as workstations. They all believe that their labs could make use of this program. Specifically this technology will provide our students with state-of-the-art (standard in the field) methods and data analysis tools for high throughput genetic data.  Building analyses with GeneMarker will help our students seeking jobs in biotechnical as well as more basic research careers.

Teaching laboratories that could use the program immediately are Biotechnology, Genetics and possibly Microbiology. The technology would serve 100+ undergraduate and graduate students/year, would be accessible to at least 4 professors year-round and would offer access to unlimited numbers of students through 3-month licensing for program downloads to personal computers. 

The first year’s cost of the program is $2950 (per location), plus the purchase of two computers dedicated to the program and other genetic tools (if PC~$600, if MAC: ~$1000). Annual upgrades are suggested, but not mandatory ($750). Because GeneMarker is used by many high-throughput labs in the country, the program will help to keep our department’s research and teaching relevant to the field and will provide for seamless analysis of gene sequences processed elsewhere.

In conclusion, bringing state of the art genetic analysis software and computers into the department supports the missions of the CESCOS and the University.  This request meets the goals of the technology-fee grants to support the needs of our students and our faculty as they train students in STEM fields and will help grow the FAU research enterprise!


Facilities
Hardware Requirements
Two computers (one for Boca and one for Davie). These computers should either be a PC (Windows 7 or 8, with at least 2GB of RAM, and at least 20GB free) or an Intel powered Mac (with Bootcamp, 2GB RAM and 20GB free).  Per online retail the PC would cost approximately $600 each and the Macs would cost approximately $1000 each. 
Software Requirements
GeneMarker Software (http://www.softgenetics.com/GeneMarker.html). Educational Instructor price: $2950 each. 
Personnel Costs
None
Other Costs
The only additional cost would be the annual service upgrade ($750). 
Timeline
Year One: Purchase computer workstations for Boca Raton and Davie. Purchase GeneMarker Instructor version. Establish a project/teaching material for Biotechnology. Begin using program for research projects.

Year Two: Annual Upgrade, determine if exercise was viable for other classes. Continue teaching and researching.

Year Three: Annual Upgrade, solidify use in the classroom and in research. 
Sustainability
The ongoing costs are the annual service upgrades. 
Resource Matching
No additional resources are matched. 
Implementing Organization
Biology Department (specifically Jake Lasala)

Proposal Budget

Fiscal Year 1 Fiscal Year 2 Fiscal Year 3 Total
Hardware One-Time $ 2,500.00 $ 0.00 $ 0.00 $ 2,500.00
Hardware Recurring $ 0.00 $ 0.00 $ 0.00 $ 0.00
Software One-time $ 5,900.00 $ 0.00 $ 0.00 $ 5,900.00
Software Recurring $ 0.00 $ 750.00 $ 750.00 $ 1,500.00
Personnel One-time $ 0.00 $ 0.00 $ 0.00 $ 0.00
Personnel Recurring $ 0.00 $ 0.00 $ 0.00 $ 0.00
Other One-time $ 0.00 $ 0.00 $ 0.00 $ 0.00
Other Recurring $ 0.00 $ 0.00 $ 0.00 $ 0.00
Totals $ 8,400.00 $ 750.00 $ 750.00 $ 9,900.00

Supporting Documentation

Filename Size Description
GeneMarker Instructional Florida Atlantic University.pdf 111,498b GeneMarker Quote (expires, end of November but could be renewed)